get per cell expression matrix and optional metadata like mean spatial coordinates and cell types from transcript data.frame
Usage
transDF_to_perCell_data(
transcript_df,
transGene_coln = "target",
cellID_coln = "updated_cellID",
spatLocs_colns = c("x", "y", "z"),
celltype_coln = "updated_celltype",
return_cellMeta = FALSE
)Arguments
- transcript_df
transcript data.frame
- transGene_coln
column name of target or gene name in
transcript_df- cellID_coln
column name of cell_ID in
transcript_df- spatLocs_colns
column names for 1st, 2nd and optional 3rd dimension of spatial coordinates in
transcript_df- celltype_coln
column name for cell type in
transcript_df- return_cellMeta
flag to return per cell data.table for metadata like mean spatial coordinates and cell types