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Changelog

Source: NEWS.md

FastReseg 1.0.0

  • Addresses compatibility with new latest.fovs that has additional column for acquisition order
  • Fixes error associated with 1-cell-per-fov data and non-standard-formatted transcript data.frame
  • Add in requirements and specifications
  • Switch to GiottoClass package for creating Delaunay spatial networks
  • Move data used in vignettes to inst\extdata folder, including example raw transcript files and helper functions for SMITAP objects
  • Save outputs as .rds instead of .RData in fastReseg_full_pipeline() wrapper

FastReseg 0.1.1

  • First release version used with nanopipeline
  • Includes parallel computation for multi-FOV processing with pipeline wrapper functions