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Data for cell type specific reference profiles

Source: R/data.R
example_refProfiles.Rd

Semi-supervised cell typing is conducted on the example SMI RNA readout for FFPE melanoma tissue samples that contains 2 tissue sections with 3 FOVs per section. The resulting cell typing outcomes are then used to estimate the mean profile of each identified cell type/cluster using "estimate_MeanProfile". The corresponding average cell-type-specific profiles are then stored in data("example_refProfiles") to be used as reference profiles.

Usage

data(example_refProfiles)

Format

An object of class "matrix" with 960 genes in rows, 22 distinct cell types in columns.

Examples

data(example_refProfiles)